rs78142040
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_001669.4(ARSD):c.1000+826G>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000547 in 913,840 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 1 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001669.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ARSD | NM_001669.4 | c.1000+826G>A | intron_variant | ENST00000381154.6 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ARSD | ENST00000381154.6 | c.1000+826G>A | intron_variant | 1 | NM_001669.4 | P1 | |||
ARSD | ENST00000217890.10 | n.1044G>A | non_coding_transcript_exon_variant | 7/7 | 1 | ||||
ARSD | ENST00000481340.1 | n.119G>A | non_coding_transcript_exon_variant | 2/2 | 3 | ||||
ARSD | ENST00000495294.1 | n.119-5925G>A | intron_variant, non_coding_transcript_variant | 2 |
Frequencies
GnomAD3 genomes Cov.: 23
GnomAD4 exome AF: 0.00000547 AC: 5AN: 913840Hom.: 0 Cov.: 30 AF XY: 0.00000333 AC XY: 1AN XY: 300708
GnomAD4 genome Cov.: 23
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at