rs782128516
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM1
The NM_000252.3(MTM1):c.1484C>G(p.Thr495Ser) variant causes a missense change. The variant allele was found at a frequency of 0.00001 in 1,097,289 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 2 hemizygotes in GnomAD. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. T495I) has been classified as Uncertain significance.
Frequency
Consequence
NM_000252.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
MTM1 | NM_000252.3 | c.1484C>G | p.Thr495Ser | missense_variant | 14/15 | ENST00000370396.7 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
MTM1 | ENST00000370396.7 | c.1484C>G | p.Thr495Ser | missense_variant | 14/15 | 1 | NM_000252.3 | P1 |
Frequencies
GnomAD3 genomes ? Cov.: 24
GnomAD3 exomes AF: 0.00000548 AC: 1AN: 182324Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 67212
GnomAD4 exome AF: 0.0000100 AC: 11AN: 1097289Hom.: 0 Cov.: 30 AF XY: 0.00000551 AC XY: 2AN XY: 362701
GnomAD4 genome ? Cov.: 24
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at