rs7923837

Variant names:

• chr10-92722160-G-A
• rs7923837

Your query was ambiguous. Multiple possible variants found:

• chr10-92722160-G-A
• chr10-92722160-G-T

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.327 in 147,190 control chromosomes in the GnomAD database, including 9,841 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.33 (9841 hom., cov: 31)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -0.304

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.86).
• BA1: GnomAd4 highest subpopulation (EAS) allele frequency at 95% confidence interval = 0.786 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.327 AC: 48094 AN: 147068 Hom.: 9842 Cov.: 31

Gnomad AFR AF: 0.0847

Gnomad AMI AF: 0.493

Gnomad AMR AF: 0.397

Gnomad ASJ AF: 0.365

Gnomad EAS AF: 0.807

Gnomad SAS AF: 0.565

Gnomad FIN AF: 0.426

Gnomad MID AF: 0.291

Gnomad NFE AF: 0.385

Gnomad OTH AF: 0.351

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.327 AC: 48106 AN: 147190 Hom.: 9841 Cov.: 31 AF XY: 0.335 AC XY: 23948 AN XY: 71522

Gnomad4 AFR AF: 0.0846

Gnomad4 AMR AF: 0.397

Gnomad4 ASJ AF: 0.365

Gnomad4 EAS AF: 0.807

Gnomad4 SAS AF: 0.566

Gnomad4 FIN AF: 0.426

Gnomad4 NFE AF: 0.385

Gnomad4 OTH AF: 0.350

Alfa AF: 0.375 Hom.: 22552

Bravo AF: 0.309

Asia WGS AF: 0.583 AC: 2024 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.86
CADD	Benign	1.2
DANN	Benign	0.78

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs7923837; hg19: chr10-94481917;