rs8014071

Variant names:

• chr14-53964782-A-G
• rs8014071

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.312 in 152,186 control chromosomes in the GnomAD database, including 8,664 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.31 (8664 hom., cov: 33)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -0.567

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.86).
• BA1: GnomAd4 highest subpopulation (NFE) allele frequency at 95% confidence interval = 0.399 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.312 AC: 47416 AN: 152068 Hom.: 8665 Cov.: 33

Gnomad AFR AF: 0.111

Gnomad AMI AF: 0.242

Gnomad AMR AF: 0.364

Gnomad ASJ AF: 0.427

Gnomad EAS AF: 0.367

Gnomad SAS AF: 0.288

Gnomad FIN AF: 0.377

Gnomad MID AF: 0.446

Gnomad NFE AF: 0.403

Gnomad OTH AF: 0.358

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.312 AC: 47432 AN: 152186 Hom.: 8664 Cov.: 33 AF XY: 0.314 AC XY: 23357 AN XY: 74384

Gnomad4 AFR AF: 0.111

Gnomad4 AMR AF: 0.364

Gnomad4 ASJ AF: 0.427

Gnomad4 EAS AF: 0.367

Gnomad4 SAS AF: 0.287

Gnomad4 FIN AF: 0.377

Gnomad4 NFE AF: 0.403

Gnomad4 OTH AF: 0.359

Alfa AF: 0.388 Hom.: 12691

Bravo AF: 0.302

Asia WGS AF: 0.334 AC: 1161 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.86
CADD	Benign	0.25
DANN	Benign	0.79

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs8014071; hg19: chr14-54431500;