rs8051957

Variant names:

• chr16-53020498-A-G
• rs8051957

Your query was ambiguous. Multiple possible variants found:

• chr16-53020498-A-G
• chr16-53020498-A-T

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.637 in 151,520 control chromosomes in the GnomAD database, including 30,955 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.64 (30955 hom., cov: 29)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -2.22

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.92).
• BA1: GnomAd4 highest subpopulation (NFE) allele frequency at 95% confidence interval = 0.655 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.637 AC: 96477 AN: 151402 Hom.: 30923 Cov.: 29

Gnomad AFR AF: 0.611

Gnomad AMI AF: 0.706

Gnomad AMR AF: 0.657

Gnomad ASJ AF: 0.657

Gnomad EAS AF: 0.464

Gnomad SAS AF: 0.609

Gnomad FIN AF: 0.651

Gnomad MID AF: 0.608

Gnomad NFE AF: 0.660

Gnomad OTH AF: 0.619

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.637 AC: 96564 AN: 151520 Hom.: 30955 Cov.: 29 AF XY: 0.633 AC XY: 46806 AN XY: 73966

Gnomad4 AFR AF: 0.611

Gnomad4 AMR AF: 0.657

Gnomad4 ASJ AF: 0.657

Gnomad4 EAS AF: 0.464

Gnomad4 SAS AF: 0.608

Gnomad4 FIN AF: 0.651

Gnomad4 NFE AF: 0.661

Gnomad4 OTH AF: 0.621

Alfa AF: 0.652 Hom.: 22597

Bravo AF: 0.635

Asia WGS AF: 0.560 AC: 1946 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.92
CADD	Benign	0.0020
DANN	Benign	0.35

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs8051957; hg19: chr16-53054410;