rs9321453
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NR_038216.1(LINC01010):n.167-12325T>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.702 in 152,034 control chromosomes in the GnomAD database, including 38,198 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NR_038216.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LINC01010 | NR_038216.1 | n.167-12325T>C | intron_variant, non_coding_transcript_variant | ||||
CT69 | NR_125852.1 | n.934+2037A>G | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CT69 | ENST00000417483.5 | n.316+2037A>G | intron_variant, non_coding_transcript_variant | 3 | |||||
LINC01010 | ENST00000431422.3 | n.621-12325T>C | intron_variant, non_coding_transcript_variant | 2 |
Frequencies
GnomAD3 genomes ? AF: 0.702 AC: 106637AN: 151916Hom.: 38163 Cov.: 32
GnomAD4 genome ? AF: 0.702 AC: 106722AN: 152034Hom.: 38198 Cov.: 32 AF XY: 0.714 AC XY: 53013AN XY: 74296
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at