rs956727

Variant names:

• chr9-84232018-A-G
• rs956727

Your query was ambiguous. Multiple possible variants found:

• chr9-84232018-A-G
• chr9-84232018-A-T

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.0323 in 152,298 control chromosomes in the GnomAD database, including 362 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.032 (362 hom., cov: 33)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 0.488

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.89).
• BA1: GnomAd4 highest subpopulation (EAS) allele frequency at 95% confidence interval = 0.243 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.0322 AC: 4906 AN: 152178 Hom.: 356 Cov.: 33

Gnomad AFR AF: 0.0126

Gnomad AMI AF: 0.00

Gnomad AMR AF: 0.116

Gnomad ASJ AF: 0.0121

Gnomad EAS AF: 0.256

Gnomad SAS AF: 0.0906

Gnomad FIN AF: 0.0180

Gnomad MID AF: 0.00

Gnomad NFE AF: 0.00795

Gnomad OTH AF: 0.0344

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.0323 AC: 4922 AN: 152298 Hom.: 362 Cov.: 33 AF XY: 0.0368 AC XY: 2742 AN XY: 74486

Gnomad4 AFR AF: 0.0128

Gnomad4 AMR AF: 0.117

Gnomad4 ASJ AF: 0.0121

Gnomad4 EAS AF: 0.255

Gnomad4 SAS AF: 0.0907

Gnomad4 FIN AF: 0.0180

Gnomad4 NFE AF: 0.00794

Gnomad4 OTH AF: 0.0336

Alfa AF: 0.0190 Hom.: 365

Bravo AF: 0.0417

Asia WGS AF: 0.140 AC: 485 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.89
CADD	Benign	4.2
DANN	Benign	0.70

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs956727; hg19: chr9-86846933;