rs9642880
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NR_117102.1(CASC11):n.366-2580C>T variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000526 in 151,986 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NR_117102.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
CASC11 | NR_117102.1 | n.366-2580C>T | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
CASC11 | ENST00000502463.7 | n.144-13957C>T | intron_variant, non_coding_transcript_variant | 2 | ||||||
CASC11 | ENST00000519071.6 | n.355-2580C>T | intron_variant, non_coding_transcript_variant | 3 | ||||||
CASC11 | ENST00000672637.1 | n.272-2580C>T | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.0000526 AC: 8AN: 151986Hom.: 0 Cov.: 32
GnomAD4 genome AF: 0.0000526 AC: 8AN: 151986Hom.: 0 Cov.: 32 AF XY: 0.0000539 AC XY: 4AN XY: 74218
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at