12-49598939-G-A
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBS1BS2
The NM_032130.3(FAM186B):c.2180C>T(p.Ala727Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00455 in 1,613,610 control chromosomes in the GnomAD database, including 39 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_032130.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
FAM186B | NM_032130.3 | c.2180C>T | p.Ala727Val | missense_variant | 5/7 | ENST00000257894.2 | NP_115506.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
FAM186B | ENST00000257894.2 | c.2180C>T | p.Ala727Val | missense_variant | 5/7 | 1 | NM_032130.3 | ENSP00000257894 | P1 |
Frequencies
GnomAD3 genomes AF: 0.00323 AC: 490AN: 151922Hom.: 2 Cov.: 31
GnomAD3 exomes AF: 0.00480 AC: 1206AN: 251094Hom.: 7 AF XY: 0.00590 AC XY: 800AN XY: 135702
GnomAD4 exome AF: 0.00469 AC: 6852AN: 1461570Hom.: 37 Cov.: 32 AF XY: 0.00524 AC XY: 3808AN XY: 727084
GnomAD4 genome AF: 0.00324 AC: 492AN: 152040Hom.: 2 Cov.: 31 AF XY: 0.00360 AC XY: 268AN XY: 74344
ClinVar
Submissions by phenotype
not provided Benign:2
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Jan 15, 2024 | - - |
Benign, criteria provided, single submitter | not provided | Breakthrough Genomics, Breakthrough Genomics | - | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at