17-3127358-T-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_003555.1(OR1G1):āc.194A>Gā(p.Asn65Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000491 in 1,613,538 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_003555.1 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
OR1G1 | NM_003555.1 | c.194A>G | p.Asn65Ser | missense_variant | 1/1 | ENST00000328890.3 | NP_003546.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
OR1G1 | ENST00000328890.3 | c.194A>G | p.Asn65Ser | missense_variant | 1/1 | 6 | NM_003555.1 | ENSP00000331545.2 |
Frequencies
GnomAD3 genomes AF: 0.000165 AC: 25AN: 151646Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000203 AC: 51AN: 251328Hom.: 0 AF XY: 0.000250 AC XY: 34AN XY: 135820
GnomAD4 exome AF: 0.000525 AC: 767AN: 1461892Hom.: 0 Cov.: 32 AF XY: 0.000524 AC XY: 381AN XY: 727248
GnomAD4 genome AF: 0.000165 AC: 25AN: 151646Hom.: 0 Cov.: 32 AF XY: 0.0000945 AC XY: 7AN XY: 74042
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Nov 26, 2024 | The c.194A>G (p.N65S) alteration is located in exon 1 (coding exon 1) of the OR1G1 gene. This alteration results from a A to G substitution at nucleotide position 194, causing the asparagine (N) at amino acid position 65 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at