18-31001625-T-A
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_001941.5(DSC3):c.2228A>T(p.Asp743Val) variant causes a missense change. The variant allele was found at a frequency of 0.00000745 in 1,609,802 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. D743N) has been classified as Uncertain significance.
Frequency
Consequence
NM_001941.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DSC3 | NM_001941.5 | c.2228A>T | p.Asp743Val | missense_variant | 14/16 | ENST00000360428.9 | |
DSC3 | NM_024423.4 | c.2228A>T | p.Asp743Val | missense_variant | 14/17 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DSC3 | ENST00000360428.9 | c.2228A>T | p.Asp743Val | missense_variant | 14/16 | 1 | NM_001941.5 | P1 | |
DSC3 | ENST00000434452.5 | c.2228A>T | p.Asp743Val | missense_variant | 14/17 | 5 | |||
DSC3 | ENST00000584980.1 | c.353A>T | p.Asp118Val | missense_variant | 3/6 | 5 |
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152142Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000199 AC: 5AN: 250742Hom.: 0 AF XY: 0.0000148 AC XY: 2AN XY: 135548
GnomAD4 exome AF: 0.00000755 AC: 11AN: 1457660Hom.: 0 Cov.: 30 AF XY: 0.00000414 AC XY: 3AN XY: 725082
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152142Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 74318
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Ambry Genetics | Jan 16, 2024 | The c.2228A>T (p.D743V) alteration is located in exon 14 (coding exon 14) of the DSC3 gene. This alteration results from a A to T substitution at nucleotide position 2228, causing the aspartic acid (D) at amino acid position 743 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at