5-43175092-G-C
Variant summary
Our verdict is Benign. Variant got -10 ACMG points: 0P and 10B. BP4_StrongBP6_ModerateBS2
The NM_001330707.2(ZNF131):āc.1831G>Cā(p.Ala611Pro) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000432 in 1,614,130 control chromosomes in the GnomAD database, including 5 homozygotes. In-silico tool predicts a benign outcome for this variant. 16/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (ā ).
Frequency
Consequence
NM_001330707.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -10 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00228 AC: 347AN: 152182Hom.: 3 Cov.: 32
GnomAD3 exomes AF: 0.000554 AC: 138AN: 248932Hom.: 0 AF XY: 0.000429 AC XY: 58AN XY: 135122
GnomAD4 exome AF: 0.000240 AC: 351AN: 1461830Hom.: 2 Cov.: 31 AF XY: 0.000199 AC XY: 145AN XY: 727208
GnomAD4 genome AF: 0.00228 AC: 347AN: 152300Hom.: 3 Cov.: 32 AF XY: 0.00222 AC XY: 165AN XY: 74478
ClinVar
Submissions by phenotype
not provided Benign:1
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Sep 11, 2018 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at