7-100958760-G-C
Variant summary
Our verdict is Likely benign. Variant got -3 ACMG points: 2P and 5B. PM2BP4_StrongBP7
The NM_005960.2(MUC3A):āc.6981G>Cā(p.Ser2327Ser) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000125 in 799,482 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_005960.2 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -3 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
MUC3A | ENST00000379458.9 | c.6981G>C | p.Ser2327Ser | synonymous_variant | Exon 2 of 12 | 5 | NM_005960.2 | ENSP00000368771.5 | ||
MUC3A | ENST00000483366.5 | c.6981G>C | p.Ser2327Ser | synonymous_variant | Exon 2 of 11 | 5 | ENSP00000483541.1 | |||
MUC3A | ENST00000414964.5 | n.795G>C | non_coding_transcript_exon_variant | Exon 1 of 10 | 5 | ENSP00000393306.2 |
Frequencies
GnomAD3 genomes AF: 0.00 AC: 0AN: 794Hom.: 0 Cov.: 0 FAILED QC
GnomAD4 exome AF: 0.00000125 AC: 1AN: 799482Hom.: 0 Cov.: 102 AF XY: 0.00 AC XY: 0AN XY: 384414
GnomAD4 genome Data not reliable, filtered out with message: AC0;AS_VQSR AF: 0.00 AC: 0AN: 794Hom.: 0 Cov.: 0 AF XY: 0.00 AC XY: 0AN XY: 404
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at