7-97006051-GGCAGCAGCAGCAGCAGCAGCA-GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
Variant summary
Our verdict is Likely benign. Variant got -5 ACMG points: 0P and 5B. BP3BS2
The NM_005222.4(DLX6):c.90_98dupGCAGCAGCA(p.Gln31_Gln33dup) variant causes a disruptive inframe insertion change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000173 in 150,048 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_005222.4 disruptive_inframe_insertion
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -5 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000173 AC: 26AN: 150048Hom.: 0 Cov.: 29
GnomAD3 exomes AF: 0.0000844 AC: 16AN: 189612Hom.: 0 AF XY: 0.0000679 AC XY: 7AN XY: 103156
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.000125 AC: 179AN: 1431982Hom.: 0 Cov.: 34 AF XY: 0.000128 AC XY: 91AN XY: 710106
GnomAD4 genome AF: 0.000173 AC: 26AN: 150048Hom.: 0 Cov.: 29 AF XY: 0.000123 AC XY: 9AN XY: 73220
ClinVar
Submissions by phenotype
not provided Uncertain:1
This variant, c.90_98dup, results in the insertion of 3 amino acid(s) of the DLX6 protein (p.Gln42_Gln44dup), but otherwise preserves the integrity of the reading frame. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with DLX6-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at