NM_000595.4:c.422A>G
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_000595.4(LTA):āc.422A>Gā(p.Gln141Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000684 in 1,461,860 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 16/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_000595.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
LTA | NM_000595.4 | c.422A>G | p.Gln141Arg | missense_variant | Exon 4 of 4 | ENST00000418386.3 | NP_000586.2 | |
LTA | NM_001159740.2 | c.422A>G | p.Gln141Arg | missense_variant | Exon 4 of 4 | NP_001153212.1 | ||
LTA | XM_047418773.1 | c.422A>G | p.Gln141Arg | missense_variant | Exon 6 of 6 | XP_047274729.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
LTA | ENST00000418386.3 | c.422A>G | p.Gln141Arg | missense_variant | Exon 4 of 4 | 1 | NM_000595.4 | ENSP00000413450.2 | ||
LTA | ENST00000454783.5 | c.422A>G | p.Gln141Arg | missense_variant | Exon 4 of 4 | 2 | ENSP00000403495.1 | |||
LTA | ENST00000471842.1 | n.670A>G | non_coding_transcript_exon_variant | Exon 3 of 3 | 2 | |||||
LTA | ENST00000489638.5 | n.550A>G | non_coding_transcript_exon_variant | Exon 3 of 3 | 5 |
Frequencies
GnomAD3 genomes Cov.: 31
GnomAD3 exomes AF: 0.00000398 AC: 1AN: 251370Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 135844
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461860Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 727232
GnomAD4 genome Cov.: 31
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at