NM_001098.3:c.192A>C
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_001098.3(ACO2):āc.192A>Cā(p.Thr64Thr) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.249 in 1,613,368 control chromosomes in the GnomAD database, including 58,833 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (ā ā ).
Frequency
Consequence
NM_001098.3 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.298 AC: 45179AN: 151834Hom.: 7779 Cov.: 32
GnomAD3 exomes AF: 0.334 AC: 83458AN: 249530Hom.: 17715 AF XY: 0.323 AC XY: 43582AN XY: 135104
GnomAD4 exome AF: 0.244 AC: 356759AN: 1461416Hom.: 51036 Cov.: 35 AF XY: 0.246 AC XY: 179127AN XY: 726964
GnomAD4 genome AF: 0.298 AC: 45241AN: 151952Hom.: 7797 Cov.: 32 AF XY: 0.308 AC XY: 22837AN XY: 74250
ClinVar
Submissions by phenotype
not specified Benign:5
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Likely benign based on allele frequency in 1000 Genomes Project or ESP global frequency and its presence in a patient with a rare or unrelated disease phenotype. NOT Sanger confirmed. -
This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease. -
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not provided Benign:3
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Optic atrophy 9 Benign:1
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Infantile cerebellar-retinal degeneration Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at