NM_001145004.2:c.2069A>G
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BP4_Strong
The NM_001145004.2(GOLGA6L6):āc.2069A>Gā(p.Glu690Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. In-silico tool predicts a benign outcome for this variant. 11/16 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_001145004.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000101 AC: 13AN: 128882Hom.: 0 Cov.: 17
GnomAD3 exomes AF: 0.000108 AC: 14AN: 129836Hom.: 1 AF XY: 0.0000999 AC XY: 7AN XY: 70058
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.000140 AC: 177AN: 1265236Hom.: 0 Cov.: 29 AF XY: 0.000159 AC XY: 100AN XY: 627098
GnomAD4 genome AF: 0.000101 AC: 13AN: 128882Hom.: 0 Cov.: 17 AF XY: 0.000112 AC XY: 7AN XY: 62700
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.2147A>G (p.E716G) alteration is located in exon 8 (coding exon 8) of the GOLGA6L6 gene. This alteration results from a A to G substitution at nucleotide position 2147, causing the glutamic acid (E) at amino acid position 716 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at