NM_001145004.2:c.2101C>T
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BP4_Strong
The NM_001145004.2(GOLGA6L6):c.2101C>T(p.Arg701Trp) variant causes a missense change involving the alteration of a non-conserved nucleotide. In-silico tool predicts a benign outcome for this variant. 11/16 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001145004.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000203 AC: 22AN: 108356Hom.: 0 Cov.: 16
GnomAD3 exomes AF: 0.0000843 AC: 10AN: 118632Hom.: 0 AF XY: 0.000156 AC XY: 10AN XY: 63980
GnomAD4 exome Data not reliable, filtered out with message: AS_VQSR AF: 0.000122 AC: 142AN: 1165610Hom.: 0 Cov.: 25 AF XY: 0.000122 AC XY: 71AN XY: 582324
GnomAD4 genome AF: 0.000194 AC: 21AN: 108466Hom.: 0 Cov.: 16 AF XY: 0.0000760 AC XY: 4AN XY: 52658
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.2179C>T (p.R727W) alteration is located in exon 8 (coding exon 8) of the GOLGA6L6 gene. This alteration results from a C to T substitution at nucleotide position 2179, causing the arginine (R) at amino acid position 727 to be replaced by a tryptophan (W). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at