NM_001330574.2:c.42C>T
Variant summary
Our verdict is Benign. Variant got -11 ACMG points: 0P and 11B. BP4_StrongBP6_ModerateBP7BS2
The NM_001330574.2(ZNF711):c.42C>T(p.Asp14Asp) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000537 in 1,209,303 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 22 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★).
Frequency
Consequence
NM_001330574.2 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -11 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ZNF711 | ENST00000674551.1 | c.42C>T | p.Asp14Asp | synonymous_variant | Exon 4 of 11 | NM_001330574.2 | ENSP00000502839.1 | |||
ZNF711 | ENST00000360700.4 | c.42C>T | p.Asp14Asp | synonymous_variant | Exon 3 of 10 | 1 | ENSP00000353922.4 | |||
ZNF711 | ENST00000276123.7 | c.42C>T | p.Asp14Asp | synonymous_variant | Exon 4 of 10 | 1 | ENSP00000276123.3 | |||
ZNF711 | ENST00000373165.7 | c.42C>T | p.Asp14Asp | synonymous_variant | Exon 3 of 9 | 1 | ENSP00000362260.3 |
Frequencies
GnomAD3 genomes AF: 0.0000357 AC: 4AN: 112188Hom.: 0 Cov.: 23 AF XY: 0.0000582 AC XY: 2AN XY: 34342
GnomAD3 exomes AF: 0.0000273 AC: 5AN: 183100Hom.: 0 AF XY: 0.0000296 AC XY: 2AN XY: 67548
GnomAD4 exome AF: 0.0000556 AC: 61AN: 1097065Hom.: 0 Cov.: 28 AF XY: 0.0000552 AC XY: 20AN XY: 362451
GnomAD4 genome AF: 0.0000356 AC: 4AN: 112238Hom.: 0 Cov.: 23 AF XY: 0.0000581 AC XY: 2AN XY: 34402
ClinVar
Submissions by phenotype
not provided Benign:1
ZNF711: BP4, BP7, BS2 -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at