NM_001504.2:c.367C>T
Variant summary
Our verdict is Likely benign. Variant got -5 ACMG points: 0P and 5B. BP4BS2
The NM_001504.2(CXCR3):c.367C>T(p.Leu123Phe) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000916 in 1,200,641 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 2 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001504.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -5 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00000891 AC: 1AN: 112271Hom.: 0 Cov.: 23 AF XY: 0.00 AC XY: 0AN XY: 34447
GnomAD3 exomes AF: 0.00000582 AC: 1AN: 171803Hom.: 0 AF XY: 0.0000172 AC XY: 1AN XY: 58301
GnomAD4 exome AF: 0.00000919 AC: 10AN: 1088370Hom.: 0 Cov.: 31 AF XY: 0.00000563 AC XY: 2AN XY: 355468
GnomAD4 genome AF: 0.00000891 AC: 1AN: 112271Hom.: 0 Cov.: 23 AF XY: 0.00 AC XY: 0AN XY: 34447
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.508C>T (p.L170F) alteration is located in exon 2 (coding exon 1) of the CXCR3 gene. This alteration results from a C to T substitution at nucleotide position 508, causing the leucine (L) at amino acid position 170 to be replaced by a phenylalanine (F). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at