NM_004596.5:c.240A>G
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6BP7BA1
The NM_004596.5(SNRPA):āc.240A>Gā(p.Lys80Lys) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0907 in 1,609,030 control chromosomes in the GnomAD database, including 9,783 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (no stars).
Frequency
Consequence
NM_004596.5 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.154 AC: 23246AN: 151420Hom.: 2792 Cov.: 30
GnomAD3 exomes AF: 0.101 AC: 24952AN: 247650Hom.: 1984 AF XY: 0.0953 AC XY: 12773AN XY: 134010
GnomAD4 exome AF: 0.0841 AC: 122642AN: 1457492Hom.: 6962 Cov.: 31 AF XY: 0.0825 AC XY: 59816AN XY: 724912
GnomAD4 genome AF: 0.154 AC: 23318AN: 151538Hom.: 2821 Cov.: 30 AF XY: 0.154 AC XY: 11359AN XY: 73996
ClinVar
Submissions by phenotype
SNRPA-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at