NM_004926.4:c.143G>A
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_004926.4(ZFP36L1):c.143G>A(p.Gly48Asp) variant causes a missense change. The variant allele was found at a frequency of 0.000000684 in 1,461,566 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_004926.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ZFP36L1 | NM_004926.4 | c.143G>A | p.Gly48Asp | missense_variant | Exon 2 of 2 | ENST00000439696.3 | NP_004917.2 | |
ZFP36L1 | NM_001244701.1 | c.350G>A | p.Gly117Asp | missense_variant | Exon 3 of 3 | NP_001231630.1 | ||
ZFP36L1 | NM_001244698.2 | c.143G>A | p.Gly48Asp | missense_variant | Exon 2 of 3 | NP_001231627.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.00000401 AC: 1AN: 249234Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 135112
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461566Hom.: 0 Cov.: 31 AF XY: 0.00 AC XY: 0AN XY: 727100
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.143G>A (p.G48D) alteration is located in exon 2 (coding exon 2) of the ZFP36L1 gene. This alteration results from a G to A substitution at nucleotide position 143, causing the glycine (G) at amino acid position 48 to be replaced by an aspartic acid (D). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at