NM_033138.4:c.771G>A
Variant summary
Our verdict is Benign. Variant got -16 ACMG points: 0P and 16B. BP4_StrongBP6_Very_StrongBS2
The NM_033138.4(CALD1):c.771G>A(p.Met257Ile) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000208 in 1,613,792 control chromosomes in the GnomAD database, including 1 homozygotes. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★).
Frequency
Consequence
NM_033138.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -16 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00117 AC: 178AN: 152060Hom.: 1 Cov.: 31
GnomAD3 exomes AF: 0.000283 AC: 70AN: 247616Hom.: 0 AF XY: 0.000246 AC XY: 33AN XY: 134242
GnomAD4 exome AF: 0.000108 AC: 158AN: 1461614Hom.: 0 Cov.: 33 AF XY: 0.0000949 AC XY: 69AN XY: 727082
GnomAD4 genome AF: 0.00117 AC: 178AN: 152178Hom.: 1 Cov.: 31 AF XY: 0.00113 AC XY: 84AN XY: 74422
ClinVar
Submissions by phenotype
not provided Benign:2
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at