chr11-134152936-G-A
Variant summary
Our verdict is Benign. Variant got -7 ACMG points: 2P and 9B. PM2BP4_StrongBP6BS1
The NM_015261.3(NCAPD3):c.*8C>T variant causes a 3 prime UTR change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000711 in 1,532,560 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
NM_015261.3 3_prime_UTR
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -7 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000322 AC: 49AN: 152200Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.000126 AC: 24AN: 191190Hom.: 0 AF XY: 0.0000994 AC XY: 10AN XY: 100570
GnomAD4 exome AF: 0.0000427 AC: 59AN: 1380242Hom.: 0 Cov.: 30 AF XY: 0.0000354 AC XY: 24AN XY: 677986
GnomAD4 genome AF: 0.000328 AC: 50AN: 152318Hom.: 0 Cov.: 33 AF XY: 0.000363 AC XY: 27AN XY: 74462
ClinVar
Submissions by phenotype
NCAPD3-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at