chr11-3038130-C-A
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBS1BS2
The NM_001014437.3(CARS1):c.721G>T(p.Ala241Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00979 in 1,613,960 control chromosomes in the GnomAD database, including 145 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_001014437.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00762 AC: 1160AN: 152224Hom.: 11 Cov.: 32
GnomAD3 exomes AF: 0.00970 AC: 2440AN: 251484Hom.: 24 AF XY: 0.0111 AC XY: 1505AN XY: 135916
GnomAD4 exome AF: 0.0100 AC: 14638AN: 1461618Hom.: 134 Cov.: 31 AF XY: 0.0106 AC XY: 7716AN XY: 727132
GnomAD4 genome AF: 0.00761 AC: 1159AN: 152342Hom.: 11 Cov.: 32 AF XY: 0.00761 AC XY: 567AN XY: 74488
ClinVar
Submissions by phenotype
not provided Benign:2
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Jun 28, 2017 | - - |
Benign, criteria provided, single submitter | not provided | Breakthrough Genomics, Breakthrough Genomics | - | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at