chr11-49158026-T-A
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_004476.3(FOLH1):c.1458A>T(p.Glu486Asp) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000485 in 1,442,528 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_004476.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.00000851 AC: 2AN: 235124Hom.: 0 AF XY: 0.00000787 AC XY: 1AN XY: 126992
GnomAD4 exome AF: 0.00000485 AC: 7AN: 1442528Hom.: 0 Cov.: 30 AF XY: 0.00000419 AC XY: 3AN XY: 716044
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.1458A>T (p.E486D) alteration is located in exon 14 (coding exon 14) of the FOLH1 gene. This alteration results from a A to T substitution at nucleotide position 1458, causing the glutamic acid (E) at amino acid position 486 to be replaced by an aspartic acid (D). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at