chr17-40819089-GCTT-G
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 1P and 1B. PM4_SupportingBP6
The NM_000421.5(KRT10):c.1443_1445delAAG(p.Ser482del) variant causes a disruptive inframe deletion change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000637 in 1,442,054 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
NM_000421.5 disruptive_inframe_deletion
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
KRT10 | NM_000421.5 | c.1443_1445delAAG | p.Ser482del | disruptive_inframe_deletion | Exon 7 of 8 | ENST00000269576.6 | NP_000412.4 | |
KRT10 | NM_001379366.1 | c.1443_1445delAAG | p.Ser482del | disruptive_inframe_deletion | Exon 7 of 8 | NP_001366295.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00182 AC: 272AN: 149648Hom.: 0 Cov.: 31
GnomAD3 exomes AF: 0.000612 AC: 59AN: 96464Hom.: 0 AF XY: 0.000648 AC XY: 36AN XY: 55588
GnomAD4 exome AF: 0.000499 AC: 645AN: 1292304Hom.: 0 AF XY: 0.000516 AC XY: 329AN XY: 637804
GnomAD4 genome AF: 0.00182 AC: 273AN: 149750Hom.: 0 Cov.: 31 AF XY: 0.00187 AC XY: 137AN XY: 73130
ClinVar
Submissions by phenotype
KRT10-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at