chr19-32830611-C-T
Variant summary
Our verdict is Benign. Variant got -9 ACMG points: 0P and 9B. BP4_StrongBP6BS2
The NM_014270.5(SLC7A9):c.*9G>A variant causes a 3 prime UTR change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000492 in 1,608,592 control chromosomes in the GnomAD database, including 6 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (no stars).
Frequency
Consequence
NM_014270.5 3_prime_UTR
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -9 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00120 AC: 182AN: 152196Hom.: 2 Cov.: 33
GnomAD3 exomes AF: 0.000934 AC: 235AN: 251490Hom.: 0 AF XY: 0.000853 AC XY: 116AN XY: 135918
GnomAD4 exome AF: 0.000418 AC: 609AN: 1456278Hom.: 4 Cov.: 29 AF XY: 0.000407 AC XY: 295AN XY: 724968
GnomAD4 genome AF: 0.00120 AC: 183AN: 152314Hom.: 2 Cov.: 33 AF XY: 0.00150 AC XY: 112AN XY: 74492
ClinVar
Submissions by phenotype
SLC7A9-related disorder Benign:1
This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at