chr3-133450432-C-A
Variant summary
Our verdict is Likely benign. Variant got -1 ACMG points: 2P and 3B. PM2BP6_ModerateBP7
The NM_003571.4(BFSP2):c.859C>A(p.Arg287Arg) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000342 in 1,461,838 control chromosomes in the GnomAD database, with no homozygous occurrence. Variant has been reported in ClinVar as Likely benign (★). Synonymous variant affecting the same amino acid position (i.e. R287R) has been classified as Uncertain significance.
Frequency
Consequence
NM_003571.4 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -1 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
BFSP2 | ENST00000302334.3 | c.859C>A | p.Arg287Arg | synonymous_variant | Exon 4 of 7 | 1 | NM_003571.4 | ENSP00000304987.2 | ||
BFSP2-AS1 | ENST00000515542.1 | n.168-1537G>T | intron_variant | Intron 2 of 4 | 1 | |||||
BFSP2 | ENST00000510039.1 | n.10C>A | non_coding_transcript_exon_variant | Exon 1 of 4 | 3 | |||||
BFSP2 | ENST00000511434.1 | n.325C>A | non_coding_transcript_exon_variant | Exon 2 of 4 | 3 |
Frequencies
GnomAD3 genomes Cov.: 31
GnomAD3 exomes AF: 0.00000398 AC: 1AN: 251152Hom.: 0 AF XY: 0.00000737 AC XY: 1AN XY: 135736
GnomAD4 exome AF: 0.00000342 AC: 5AN: 1461838Hom.: 0 Cov.: 31 AF XY: 0.00000550 AC XY: 4AN XY: 727220
GnomAD4 genome Cov.: 31
ClinVar
Submissions by phenotype
Cataract 12 multiple types Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at