chr4-68567944-C-A
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_001077.4(UGT2B17):c.541G>T(p.Val181Phe) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000152 in 1,380,616 control chromosomes in the GnomAD database, including 4 homozygotes. In-silico tool predicts a benign outcome for this variant. 16/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001077.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
UGT2B17 | ENST00000317746.3 | c.541G>T | p.Val181Phe | missense_variant | Exon 2 of 7 | 1 | NM_001077.4 | ENSP00000320401.2 | ||
UGT2B17 | ENST00000684088.1 | c.-26-2224G>T | intron_variant | Intron 1 of 4 | ENSP00000507374.1 |
Frequencies
GnomAD3 genomes AF: 0.0000158 AC: 2AN: 126652Hom.: 0 Cov.: 20
GnomAD3 exomes AF: 0.0000199 AC: 4AN: 201108Hom.: 2 AF XY: 0.0000185 AC XY: 2AN XY: 108290
GnomAD4 exome AF: 0.0000152 AC: 19AN: 1253964Hom.: 4 Cov.: 29 AF XY: 0.00000967 AC XY: 6AN XY: 620410
GnomAD4 genome AF: 0.0000158 AC: 2AN: 126652Hom.: 0 Cov.: 20 AF XY: 0.0000165 AC XY: 1AN XY: 60436
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at