chr9-101686816-C-T
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_133445.3(GRIN3A):c.1084G>A(p.Val362Met) variant causes a missense change. The variant allele was found at a frequency of 0.305 in 1,613,836 control chromosomes in the GnomAD database, including 78,150 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_133445.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.354 AC: 53795AN: 152028Hom.: 10182 Cov.: 33
GnomAD3 exomes AF: 0.298 AC: 74763AN: 251098Hom.: 12085 AF XY: 0.298 AC XY: 40454AN XY: 135692
GnomAD4 exome AF: 0.300 AC: 438920AN: 1461690Hom.: 67937 Cov.: 54 AF XY: 0.301 AC XY: 218747AN XY: 727136
GnomAD4 genome AF: 0.354 AC: 53880AN: 152146Hom.: 10213 Cov.: 33 AF XY: 0.352 AC XY: 26208AN XY: 74384
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at