chrX-112779197-G-C
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001113490.2(AMOT):āc.2957C>Gā(p.Pro986Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000893 in 111,929 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 1 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. 13/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001113490.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
AMOT | ENST00000371959.9 | c.2957C>G | p.Pro986Arg | missense_variant | Exon 13 of 14 | 1 | NM_001113490.2 | ENSP00000361027.3 | ||
AMOT | ENST00000371962.5 | c.2261C>G | p.Pro754Arg | missense_variant | Exon 10 of 11 | 1 | ENSP00000361030.1 | |||
AMOT | ENST00000304758.5 | c.1730C>G | p.Pro577Arg | missense_variant | Exon 11 of 12 | 1 | ENSP00000305557.1 |
Frequencies
GnomAD3 genomes AF: 0.00000894 AC: 1AN: 111875Hom.: 0 Cov.: 23 AF XY: 0.0000294 AC XY: 1AN XY: 34037
GnomAD4 exome Cov.: 12
GnomAD4 genome AF: 0.00000893 AC: 1AN: 111929Hom.: 0 Cov.: 23 AF XY: 0.0000293 AC XY: 1AN XY: 34101
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at