rs1034652574
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_006750.4(SNTB2):āc.286C>Gā(p.Pro96Ala) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000979 in 1,021,264 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 14/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_006750.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
SNTB2 | NM_006750.4 | c.286C>G | p.Pro96Ala | missense_variant | Exon 1 of 7 | ENST00000336278.9 | NP_006741.1 | |
SNTB2 | NR_172088.1 | n.289C>G | non_coding_transcript_exon_variant | Exon 1 of 8 | ||||
SNTB2 | NR_172089.1 | n.289C>G | non_coding_transcript_exon_variant | Exon 1 of 7 | ||||
SNTB2 | NR_172090.1 | n.289C>G | non_coding_transcript_exon_variant | Exon 1 of 6 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SNTB2 | ENST00000336278.9 | c.286C>G | p.Pro96Ala | missense_variant | Exon 1 of 7 | 1 | NM_006750.4 | ENSP00000338191.4 | ||
SNTB2 | ENST00000467311.5 | n.286C>G | non_coding_transcript_exon_variant | Exon 1 of 6 | 1 | ENSP00000436443.1 | ||||
UTP4 | ENST00000567287.2 | n.82+20267C>G | intron_variant | Intron 1 of 2 | 3 |
Frequencies
GnomAD3 genomes Cov.: 31
GnomAD4 exome AF: 9.79e-7 AC: 1AN: 1021264Hom.: 0 Cov.: 29 AF XY: 0.00 AC XY: 0AN XY: 481412
GnomAD4 genome Cov.: 31
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at