rs1182774429
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_001127202.4(PCID2):c.728C>T(p.Ser243Phe) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000657 in 152,158 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 13/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001127202.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
PCID2 | ENST00000337344.9 | c.728C>T | p.Ser243Phe | missense_variant | Exon 10 of 14 | 2 | NM_001127202.4 | ENSP00000337405.4 | ||
PCID2 | ENST00000375477.5 | c.728C>T | p.Ser243Phe | missense_variant | Exon 10 of 15 | 1 | ENSP00000364626.1 | |||
PCID2 | ENST00000375479.6 | c.728C>T | p.Ser243Phe | missense_variant | Exon 10 of 15 | 2 | ENSP00000364628.2 | |||
PCID2 | ENST00000375457.2 | c.722C>T | p.Ser241Phe | missense_variant | Exon 10 of 14 | 1 | ENSP00000364606.2 | |||
PCID2 | ENST00000375459.5 | c.722C>T | p.Ser241Phe | missense_variant | Exon 10 of 15 | 2 | ENSP00000364608.1 |
Frequencies
GnomAD3 genomes AF: 0.00000657 AC: 1AN: 152158Hom.: 0 Cov.: 33
GnomAD4 exome Cov.: 29
GnomAD4 genome AF: 0.00000657 AC: 1AN: 152158Hom.: 0 Cov.: 33 AF XY: 0.0000135 AC XY: 1AN XY: 74344
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at