rs1232606613
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP4
The NM_004827.3(ABCG2):āc.1961A>Gā(p.Tyr654Cys) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000498 in 1,605,484 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_004827.3 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ABCG2 | ENST00000237612.8 | c.1961A>G | p.Tyr654Cys | missense_variant | Exon 16 of 16 | 1 | NM_004827.3 | ENSP00000237612.3 | ||
ABCG2 | ENST00000515655 | c.*115A>G | 3_prime_UTR_variant | Exon 16 of 16 | 1 | ENSP00000426917.1 | ||||
ABCG2 | ENST00000650821.1 | c.1961A>G | p.Tyr654Cys | missense_variant | Exon 17 of 17 | ENSP00000498246.1 |
Frequencies
GnomAD3 genomes AF: 0.0000263 AC: 4AN: 152188Hom.: 0 Cov.: 32
GnomAD4 exome AF: 0.00000275 AC: 4AN: 1453296Hom.: 0 Cov.: 30 AF XY: 0.00 AC XY: 0AN XY: 722818
GnomAD4 genome AF: 0.0000263 AC: 4AN: 152188Hom.: 0 Cov.: 32 AF XY: 0.0000404 AC XY: 3AN XY: 74342
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.1961A>G (p.Y654C) alteration is located in exon 16 (coding exon 15) of the ABCG2 gene. This alteration results from a A to G substitution at nucleotide position 1961, causing the tyrosine (Y) at amino acid position 654 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at