rs141265324
Variant summary
Our verdict is Likely benign. Variant got -5 ACMG points: 0P and 5B. BP4BS2
The NM_005436.5(CCDC6):āc.716T>Cā(p.Val239Ala) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.000277 in 1,609,410 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (ā ).
Frequency
Consequence
NM_005436.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -5 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000151 AC: 23AN: 152188Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000258 AC: 64AN: 247950Hom.: 0 AF XY: 0.000284 AC XY: 38AN XY: 133876
GnomAD4 exome AF: 0.000290 AC: 423AN: 1457222Hom.: 0 Cov.: 28 AF XY: 0.000277 AC XY: 201AN XY: 724784
GnomAD4 genome AF: 0.000151 AC: 23AN: 152188Hom.: 0 Cov.: 32 AF XY: 0.000108 AC XY: 8AN XY: 74348
ClinVar
Submissions by phenotype
not specified Uncertain:1
The c.716T>C (p.V239A) alteration is located in exon 5 (coding exon 5) of the CCDC6 gene. This alteration results from a T to C substitution at nucleotide position 716, causing the valine (V) at amino acid position 239 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at