rs144089256
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_005619.5(RTN2):c.1315G>T(p.Val439Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000686 in 1,457,404 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 13/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_005619.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
RTN2 | NM_005619.5 | c.1315G>T | p.Val439Leu | missense_variant | Exon 7 of 11 | ENST00000245923.9 | NP_005610.1 | |
RTN2 | NM_206900.3 | c.1096G>T | p.Val366Leu | missense_variant | Exon 6 of 10 | NP_996783.1 | ||
RTN2 | NM_206901.3 | c.295G>T | p.Val99Leu | missense_variant | Exon 3 of 7 | NP_996784.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome AF: 6.86e-7 AC: 1AN: 1457404Hom.: 0 Cov.: 33 AF XY: 0.00000138 AC XY: 1AN XY: 724506
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at