rs144418706
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 0P and 2B. BP4_Moderate
The NM_182607.5(VSIG1):c.438C>A(p.Ser146Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000413 in 1,209,384 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 2 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_182607.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
VSIG1 | ENST00000217957.10 | c.438C>A | p.Ser146Arg | missense_variant | Exon 4 of 7 | 1 | NM_182607.5 | ENSP00000217957.3 | ||
VSIG1 | ENST00000415430.7 | c.546C>A | p.Ser182Arg | missense_variant | Exon 5 of 8 | 2 | ENSP00000402219.3 | |||
VSIG1 | ENST00000485533.1 | n.274C>A | non_coding_transcript_exon_variant | Exon 3 of 4 | 5 |
Frequencies
GnomAD3 genomes AF: 0.00000894 AC: 1AN: 111867Hom.: 0 Cov.: 23 AF XY: 0.0000294 AC XY: 1AN XY: 34035
GnomAD3 exomes AF: 0.0000109 AC: 2AN: 183171Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 67669
GnomAD4 exome AF: 0.00000364 AC: 4AN: 1097517Hom.: 0 Cov.: 29 AF XY: 0.00000276 AC XY: 1AN XY: 362943
GnomAD4 genome AF: 0.00000894 AC: 1AN: 111867Hom.: 0 Cov.: 23 AF XY: 0.0000294 AC XY: 1AN XY: 34035
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at