rs145115573
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 2P and 10B. PM2BP4_StrongBP6_ModerateBS1
The NM_001206927.2(DNAH8):c.788C>A(p.Ala263Glu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000274 in 1,563,160 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. A263T) has been classified as Uncertain significance.
Frequency
Consequence
NM_001206927.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DNAH8 | NM_001206927.2 | c.788C>A | p.Ala263Glu | missense_variant | 6/93 | ENST00000327475.11 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DNAH8 | ENST00000327475.11 | c.788C>A | p.Ala263Glu | missense_variant | 6/93 | 5 | NM_001206927.2 | P2 | |
DNAH8 | ENST00000359357.7 | c.137C>A | p.Ala46Glu | missense_variant | 4/91 | 2 | A2 | ||
DNAH8 | ENST00000449981.6 | c.788C>A | p.Ala263Glu | missense_variant | 5/82 | 5 |
Frequencies
GnomAD3 genomes AF: 0.000289 AC: 44AN: 152068Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.000599 AC: 127AN: 212044Hom.: 0 AF XY: 0.000517 AC XY: 60AN XY: 116072
GnomAD4 exome AF: 0.000273 AC: 385AN: 1410974Hom.: 0 Cov.: 30 AF XY: 0.000287 AC XY: 201AN XY: 700974
GnomAD4 genome AF: 0.000289 AC: 44AN: 152186Hom.: 0 Cov.: 32 AF XY: 0.000403 AC XY: 30AN XY: 74396
ClinVar
Submissions by phenotype
Primary ciliary dyskinesia Benign:1
Likely benign, criteria provided, single submitter | clinical testing | Invitae | Nov 07, 2023 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at