rs16960244
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000662551.1(ENSG00000259754):n.188+49469T>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.104 in 152,274 control chromosomes in the GnomAD database, including 1,431 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
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Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000662551.1 | n.188+49469T>C | intron_variant, non_coding_transcript_variant | |||||||
ENST00000664705.1 | n.188+49469T>C | intron_variant, non_coding_transcript_variant | |||||||
ENST00000665188.1 | n.68+49469T>C | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes AF: 0.103 AC: 15748AN: 152156Hom.: 1426 Cov.: 32
GnomAD4 genome AF: 0.104 AC: 15783AN: 152274Hom.: 1431 Cov.: 32 AF XY: 0.105 AC XY: 7810AN XY: 74452
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at