rs199751490
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_002218.5(ITIH4):āc.2234G>Cā(p.Arg745Pro) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000684 in 1,461,516 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_002218.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ITIH4 | ENST00000266041.9 | c.2234G>C | p.Arg745Pro | missense_variant | Exon 20 of 24 | 1 | NM_002218.5 | ENSP00000266041.4 | ||
ENSG00000243696 | ENST00000468472.1 | n.*3870G>C | non_coding_transcript_exon_variant | Exon 20 of 24 | 2 | ENSP00000422253.1 | ||||
ENSG00000243696 | ENST00000468472.1 | n.*3870G>C | 3_prime_UTR_variant | Exon 20 of 24 | 2 | ENSP00000422253.1 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD3 exomes AF: 0.00000400 AC: 1AN: 250196Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 135538
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461516Hom.: 0 Cov.: 33 AF XY: 0.00 AC XY: 0AN XY: 727050
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at