rs200148764
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_014550.4(CARD10):c.1024G>A(p.Val342Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00019 in 1,597,626 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as risk factor (no stars).
Frequency
Consequence
NM_014550.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CARD10 | NM_014550.4 | c.1024G>A | p.Val342Met | missense_variant | 5/20 | ENST00000251973.10 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CARD10 | ENST00000251973.10 | c.1024G>A | p.Val342Met | missense_variant | 5/20 | 1 | NM_014550.4 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.000197 AC: 30AN: 152222Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.000266 AC: 60AN: 225842Hom.: 0 AF XY: 0.000234 AC XY: 29AN XY: 123746
GnomAD4 exome AF: 0.000189 AC: 273AN: 1445288Hom.: 0 Cov.: 32 AF XY: 0.000163 AC XY: 117AN XY: 718952
GnomAD4 genome ? AF: 0.000203 AC: 31AN: 152338Hom.: 0 Cov.: 33 AF XY: 0.000215 AC XY: 16AN XY: 74500
ClinVar
Submissions by phenotype
Primary open angle glaucoma Other:1
risk factor, no assertion criteria provided | case-control | Flinders Ophthalmology, Flinders University | Mar 29, 2016 | GWAS associated gene CARD10 - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at