rs201849460
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 3P and 1B. PM2PP5BP4
The NM_001622.4(AHSG):c.950G>A(p.Arg317His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000737 in 1,614,152 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/21 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Pathogenic (no stars). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R317C) has been classified as Likely benign.
Frequency
Consequence
NM_001622.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
AHSG | NM_001622.4 | c.950G>A | p.Arg317His | missense_variant | 7/7 | ENST00000411641.7 | NP_001613.2 | |
AHSG | NM_001354571.2 | c.953G>A | p.Arg318His | missense_variant | 7/7 | NP_001341500.1 | ||
AHSG | NM_001354572.2 | c.947G>A | p.Arg316His | missense_variant | 7/7 | NP_001341501.1 | ||
AHSG | NM_001354573.2 | c.866G>A | p.Arg289His | missense_variant | 6/6 | NP_001341502.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
AHSG | ENST00000411641.7 | c.950G>A | p.Arg317His | missense_variant | 7/7 | 1 | NM_001622.4 | ENSP00000393887.2 |
Frequencies
GnomAD3 genomes AF: 0.0000723 AC: 11AN: 152142Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000915 AC: 23AN: 251254Hom.: 0 AF XY: 0.000103 AC XY: 14AN XY: 135816
GnomAD4 exome AF: 0.0000739 AC: 108AN: 1461892Hom.: 0 Cov.: 33 AF XY: 0.0000825 AC XY: 60AN XY: 727246
GnomAD4 genome AF: 0.0000722 AC: 11AN: 152260Hom.: 0 Cov.: 32 AF XY: 0.0000537 AC XY: 4AN XY: 74460
ClinVar
Submissions by phenotype
Alopecia-intellectual disability syndrome 1 Pathogenic:1
Pathogenic, no assertion criteria provided | literature only | OMIM | Oct 29, 2024 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at