rs34117835
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The ENST00000339363.7(RPGR):c.2917C>T(p.Pro973Ser) variant causes a missense change. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 11/17 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. P973L) has been classified as Likely benign.
Frequency
Consequence
ENST00000339363.7 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
RPGR | NM_000328.3 | c.2302C>T | p.Pro768Ser | missense_variant | 19/19 | ||
RPGR | NM_001367245.1 | c.2299C>T | p.Pro767Ser | missense_variant | 19/19 | ||
RPGR | NM_001367246.1 | c.2116C>T | p.Pro706Ser | missense_variant | 18/18 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
RPGR | ENST00000339363.7 | c.2917C>T | p.Pro973Ser | missense_variant | 18/18 | 5 | P4 | ||
RPGR | ENST00000642395.2 | c.2302C>T | p.Pro768Ser | missense_variant | 19/19 | A2 | |||
RPGR | ENST00000644337.1 | c.2116C>T | p.Pro706Ser | missense_variant | 18/18 |
Frequencies
GnomAD3 genomes ? Cov.: 23
GnomAD4 exome Cov.: 29
GnomAD4 genome ? Cov.: 23
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at