rs35718712
Variant summary
Our verdict is Benign. Variant got -16 ACMG points: 0P and 16B. BP4_StrongBP6_Very_StrongBS2
The NM_152424.4(AMER1):c.832G>T(p.Ala278Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000634 in 1,204,351 control chromosomes in the GnomAD database, including 6 homozygotes. There are 205 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. 13/19 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★). Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_152424.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -16 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00339 AC: 384AN: 113307Hom.: 3 Cov.: 24 AF XY: 0.00316 AC XY: 112AN XY: 35445
GnomAD3 exomes AF: 0.00114 AC: 196AN: 171700Hom.: 0 AF XY: 0.000880 AC XY: 51AN XY: 57932
GnomAD4 exome AF: 0.000346 AC: 378AN: 1090992Hom.: 3 Cov.: 34 AF XY: 0.000260 AC XY: 93AN XY: 357684
GnomAD4 genome AF: 0.00340 AC: 385AN: 113359Hom.: 3 Cov.: 24 AF XY: 0.00315 AC XY: 112AN XY: 35507
ClinVar
Submissions by phenotype
not provided Benign:2
Likely benign, criteria provided, single submitter | clinical testing | Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics | May 04, 2017 | - - |
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Jan 06, 2025 | - - |
not specified Other:1
not provided, no classification provided | reference population | ITMI | Sep 19, 2013 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at