rs35865357
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBS1BS2
The NM_001277115.2(DNAH11):c.8990G>A(p.Arg2997Gln) variant causes a missense change. The variant allele was found at a frequency of 0.0165 in 1,613,800 control chromosomes in the GnomAD database, including 277 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Conflicting classifications of pathogenicity (no stars). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R2997W) has been classified as Benign.
Frequency
Consequence
NM_001277115.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DNAH11 | NM_001277115.2 | c.8990G>A | p.Arg2997Gln | missense_variant | 55/82 | ENST00000409508.8 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DNAH11 | ENST00000409508.8 | c.8990G>A | p.Arg2997Gln | missense_variant | 55/82 | 5 | NM_001277115.2 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.0113 AC: 1719AN: 152080Hom.: 17 Cov.: 31
GnomAD3 exomes AF: 0.0112 AC: 2798AN: 249018Hom.: 29 AF XY: 0.0111 AC XY: 1497AN XY: 135084
GnomAD4 exome AF: 0.0170 AC: 24886AN: 1461602Hom.: 260 Cov.: 31 AF XY: 0.0166 AC XY: 12042AN XY: 727084
GnomAD4 genome ? AF: 0.0113 AC: 1720AN: 152198Hom.: 17 Cov.: 31 AF XY: 0.0110 AC XY: 820AN XY: 74420
ClinVar
Submissions by phenotype
Primary ciliary dyskinesia Uncertain:1Benign:1
Uncertain significance, criteria provided, single submitter | clinical testing | Illumina Laboratory Services, Illumina | Jun 14, 2016 | - - |
Benign, criteria provided, single submitter | clinical testing | Invitae | Jan 31, 2024 | - - |
not specified Benign:2
Benign, criteria provided, single submitter | clinical testing | PreventionGenetics, part of Exact Sciences | - | - - |
Benign, criteria provided, single submitter | clinical testing | Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine | Feb 21, 2013 | Arg2997Gln in exon 55 of DNAH11: This variant is not expected to have clinical s ignificance because it has been identified in 1.9% (156/8366) of European Americ an chromosomes from a broad population by the NHLBI Exome Sequencing Project (ht tp://evs.gs.washington.edu/EVS; dbSNP rs35865357). - |
not provided Benign:2
Benign, criteria provided, single submitter | clinical testing | GeneDx | Feb 22, 2021 | This variant is associated with the following publications: (PMID: 31213628, 24450482, 12142464) - |
Benign, criteria provided, single submitter | clinical testing | CeGaT Center for Human Genetics Tuebingen | Apr 01, 2024 | DNAH11: BP4, BS1, BS2 - |
Primary ciliary dyskinesia 7 Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Laboratory of Medical Genetics, National & Kapodistrian University of Athens | Oct 01, 2021 | PM1, PP3, PP5, BS1, BS2 - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at