rs563630291
Positions:
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP6_Very_StrongBS2
The variant allele was found at a frequency of 0.0104 in 318,044 control chromosomes in the GnomAD database, including 28 homozygotes. Variant has been reported in ClinVar as Benign (★★).
Frequency
Genomes: 𝑓 0.0097 ( 10 hom., cov: 33)
Exomes 𝑓: 0.011 ( 18 hom. )
Consequence
Unknown
Scores
Not classified
Clinical Significance
Conservation
PhyloP100: -2.66
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
BP6
Variant 11-2161296-TG-T is Benign according to our data. Variant chr11-2161296-TG-T is described in ClinVar as [Benign]. Clinvar id is 435506.Status of the report is criteria_provided_multiple_submitters_no_conflicts, 2 stars.
BS2
High Homozygotes in GnomAd4 at 10 gene
Transcripts
RefSeq
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Ensembl
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Frequencies
GnomAD3 genomes AF: 0.00967 AC: 1470AN: 152010Hom.: 10 Cov.: 33
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GnomAD4 exome AF: 0.0110 AC: 1833AN: 165916Hom.: 18 Cov.: 0 AF XY: 0.0109 AC XY: 913AN XY: 83750
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GnomAD4 genome AF: 0.00966 AC: 1469AN: 152128Hom.: 10 Cov.: 33 AF XY: 0.0103 AC XY: 764AN XY: 74384
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ClinVar
Significance: Benign
Submissions summary: Benign:4
Revision: criteria provided, multiple submitters, no conflicts
LINK: link
Submissions by phenotype
not provided Benign:2
Benign, criteria provided, single submitter | clinical testing | GeneDx | Mar 25, 2019 | - - |
Benign, criteria provided, single submitter | clinical testing | CeGaT Center for Human Genetics Tuebingen | Sep 01, 2024 | INS-IGF2: BS1, BS2 - |
not specified Benign:1
Benign, criteria provided, single submitter | clinical testing | Genetic Services Laboratory, University of Chicago | Oct 31, 2016 | - - |
Neonatal insulin-dependent diabetes mellitus Benign:1
Benign, criteria provided, single submitter | research | Clinical Genomics, Uppaluri K&H Personalized Medicine Clinic | - | Mutations in INS gene can cause early onset diabetes mellitus which is insulin dependent. May have poor response to sulfonylureas, as this mutation can cause beta cell destruction. However no sufficient evidence is found to ascertain the role of this particular variant rs563630291, yet. - |
Computational scores
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Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at