rs77606940
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_021075.4(NDUFV3):c.11C>A(p.Pro4Gln) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000361 in 1,386,094 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_021075.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
NDUFV3 | NM_021075.4 | c.11C>A | p.Pro4Gln | missense_variant | Exon 1 of 4 | ENST00000354250.7 | NP_066553.3 | |
NDUFV3 | NM_001001503.2 | c.11C>A | p.Pro4Gln | missense_variant | Exon 1 of 3 | NP_001001503.1 | ||
NDUFV3 | XM_011529586.3 | c.11C>A | p.Pro4Gln | missense_variant | Exon 1 of 5 | XP_011527888.1 | ||
NDUFV3 | XM_017028359.2 | c.11C>A | p.Pro4Gln | missense_variant | Exon 1 of 4 | XP_016883848.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
NDUFV3 | ENST00000354250.7 | c.11C>A | p.Pro4Gln | missense_variant | Exon 1 of 4 | 1 | NM_021075.4 | ENSP00000346196.2 | ||
NDUFV3 | ENST00000340344.4 | c.11C>A | p.Pro4Gln | missense_variant | Exon 1 of 3 | 1 | ENSP00000342895.3 | |||
NDUFV3 | ENST00000460740.1 | n.24C>A | non_coding_transcript_exon_variant | Exon 1 of 2 | 2 | |||||
NDUFV3 | ENST00000460259.1 | n.572-3583C>A | intron_variant | Intron 3 of 5 | 2 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome AF: 0.00000361 AC: 5AN: 1386094Hom.: 0 Cov.: 31 AF XY: 0.00000146 AC XY: 1AN XY: 684068
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at