rs875989811
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM1BP4_Moderate
The NM_001114753.3(ENG):c.1282A>C(p.Asn428His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000013 in 1,459,060 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★).
Frequency
Consequence
NM_001114753.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ENG | NM_001114753.3 | c.1282A>C | p.Asn428His | missense_variant | 10/15 | ENST00000373203.9 | |
LOC102723566 | NR_136302.1 | n.1568+940T>G | intron_variant, non_coding_transcript_variant | ||||
ENG | NM_000118.4 | c.1282A>C | p.Asn428His | missense_variant | 10/14 | ||
ENG | NM_001278138.2 | c.736A>C | p.Asn246His | missense_variant | 10/15 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENG | ENST00000373203.9 | c.1282A>C | p.Asn428His | missense_variant | 10/15 | 1 | NM_001114753.3 | P2 | |
ENST00000439298.5 | n.1568+940T>G | intron_variant, non_coding_transcript_variant | 2 |
Frequencies
GnomAD3 genomes ? Cov.: 31
GnomAD4 exome AF: 0.0000130 AC: 19AN: 1459060Hom.: 0 Cov.: 32 AF XY: 0.0000138 AC XY: 10AN XY: 725514
GnomAD4 genome ? Cov.: 31
ClinVar
Submissions by phenotype
Telangiectasia, hereditary hemorrhagic, type 1 Uncertain:1
Uncertain significance, criteria provided, single submitter | research | CSER _CC_NCGL, University of Washington | Mar 11, 2015 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at