rs9385512

Variant names:

• chr6-129712721-G-A
• rs9385512

Your query was ambiguous. Multiple possible variants found:

• chr6-129712721-G-A
• chr6-129712721-G-T

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.769 in 152,110 control chromosomes in the GnomAD database, including 45,328 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.77 (45328 hom., cov: 31)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -0.286

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.97).
• BA1: GnomAd4 highest subpopulation (EAS) allele frequency at 95% confidence interval = 0.916 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.769 AC: 116854 AN: 151992 Hom.: 45297 Cov.: 31

Gnomad AFR AF: 0.700

Gnomad AMI AF: 0.803

Gnomad AMR AF: 0.821

Gnomad ASJ AF: 0.776

Gnomad EAS AF: 0.939

Gnomad SAS AF: 0.747

Gnomad FIN AF: 0.860

Gnomad MID AF: 0.810

Gnomad NFE AF: 0.772

Gnomad OTH AF: 0.774

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.769 AC: 116940 AN: 152110 Hom.: 45328 Cov.: 31 AF XY: 0.774 AC XY: 57564 AN XY: 74358

Gnomad4 AFR AF: 0.700

Gnomad4 AMR AF: 0.822

Gnomad4 ASJ AF: 0.776

Gnomad4 EAS AF: 0.938

Gnomad4 SAS AF: 0.747

Gnomad4 FIN AF: 0.860

Gnomad4 NFE AF: 0.772

Gnomad4 OTH AF: 0.775

Alfa AF: 0.772 Hom.: 58810

Bravo AF: 0.765

Asia WGS AF: 0.827 AC: 2873 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.97
CADD	Benign	0.30
DANN	Benign	0.19

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs9385512; hg19: chr6-130033866; COSMIC: COSV63765978;